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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYHC_ORYSJ
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPAAAAAV TLGGKGAALT PAAVYALSHG LADPAIDCCA SPLVRVADAV AALSCEAARG  60
   61 DVAAFDVPTS GDGLSAKDEA DVAADVKMLL FGSKLVGAAG GADAASFTKV PTVNGIFREA 120
  121 VRALHARVRI ELNAPVKLGK RDAVQTGEGK EEALVALATQ LARPVQAMLK LSVARARLCV 180
  181 ARIDDAELRK KLTDGVEIDD LKGMLGKVTI DSDAVSVLRG VYNSLLKFRD ILAWEAAVAM 240
  241 AVIEMDSSIE KPQACEENEA GSSTENPHAS GEKPKGDKKS KKKKTLGKGT SAVLMLLRDL 300
  301 VTNGKEVLSV NSALLAEWGT ELSLLFDPKC PRLVSLVDKV KEIVETNEVR RLPKIPKGTR 360
  361 DFGKEQMAIR EHAFSIITGV FKMHGAVSLD TPVFELRETL MGKYGEDSKL IYDLADQGGE 420
  421 LCSLRYDLTV PFARYVAMNN ISSLKRYQIA KVYRRDNPSK GRYREFYQCD FDIAGVYETM 480
  481 EPDFEVIKVL TELLDQLDIG TYEIKLNHRK LLDGMLEICG VPPEKFRTVC SSIDKLDKQT 540
  541 FEQVKKELVD EKGISNETAD KIGDLVKTRG PPLEVLLELR KEGSKFMGNA GSVTALNELE 600
  601 ILFKALDKAN AIGKIVFDLS LARGLDYYTG VIYEAVFKGT TQVGSIAAGG RYDNLVGMFS 660
  661 GKQVPAVGVS LGIERVFAIM EQQEMEKNQI RATETEVLVS IIGKDLILAA ELVSELWNAG 720
  721 IKAEFKLTTR IQNHLKYATQ SGIPWMVLVG ESEISSGKVK LKNLAASQEE EVDRTEFAQV 780
  781 LKQKLRNP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle