YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54287600, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPSPNSLS AASHPTSSSS SFHLHLQLQQ PVPHLPFPRS LPLNLPVLRL ARPLLPPAPL  60
   61 ASSGSGGIGI GGGGDDDEGR DNAGGGDGGD DDASVNRREA LFVLAQLGRK LESLPADLAA 120
  121 AIEGGRVPGE IVQRFADLEK SGLFRWLLQF GGFKERLLAD DLFLAKVAME CGVGIFTKTA 180
  181 AEYERRRENF VKELDFVIAD VVMAIVADFM LVWLPAPTVS LQPPLAVNAG SIAKFFHNCP 240
  241 DNAFQVALAG TSYSLLQRVG AIMRNGAKLF AVGTSASLIG TGVTNALIKA RKAVSKDFEG 300
  301 ESEDIPIVST SVAYGVYMAV SSNLRYQILA GVIEQRMLEP LLHHHKLVLS ALCFAVRTGN 360
  361 TFLGSLLWVD YAKWIGIQ

Type	Start	End	Confidence
Cytoplasmic	1	195	0.73
Transmembrane Helix	196	216	0.74
Non-Cytoplasmic	217	268	0.83
Transmembrane Helix	269	288	0.69
Cytoplasmic	289	346	0.63
Transmembrane Helix	347	368	0.61
Non-Cytoplasmic	369	378	0.66