YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBL3_ORYSA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGGAGSSR SVAPCCCCAV LLAAALLFSA PATTEAYDAL DPNGNITIKW DVMSWTPDGY  60
   61 VAVVTMFNYQ QFRHIQAPGW QLGWTWAKKE VIWSMVGAQT TEQGDCSKFK GGTPHCCKKD 120
  121 PTVVDLLPGT PYNMQIANCC KAGVINTFNQ DPSNAASSFQ ISVGLAGTTN KTVKLPKNFT 180
  181 LKAPGPGYTC GRAMIVRPTK FFTGDGRRAT QALMTWNVTC TYSQFLAQKT PSCCVSLSSF 240
  241 YNDTIVNCPT CSCGCQNNGT SPGSCVNENS PYLQSAIDGP GKWTGQPLVQ CTSHMCPIRI 300
  301 HWHVKLNYKE YWRVKITITN FNYRMNYTQW NLVAQHPNFN NITQLFSFNY KPLTPYGSKI 360
  361 NDTAMFWGVK FYNDLLMQAG PLGNAQSELL LRKDSKDFTF DKGWAFPHRV YFNGDNCVMP 420
  421 PPDAYPWLPN ASPLTKQPLT LSVLVFSIVL ATLLAYA

Type	Start	End	Confidence
Signal Peptide	1	36	0.97
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	437	0.99
Transmembrane Helix	438	456	0.54
Cytoplasmic	457	457	0.56