YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERK5_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.37
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGSSRGFI WLILFLDFVS RVTGKTQVDA LIALRSSLSS GDHTNNILQS WNATHVTPCS  60
   61 WFHVTCNTEN SVTRLDLGSA NLSGELVPQL AQLPNLQYLE LFNNNITGEI PEELGDLMEL 120
  121 VSLDLFANNI SGPIPSSLGK LGKLRFLRLY NNSLSGEIPR SLTALPLDVL DISNNRLSGD 180
  181 IPVNGSFSQF TSMSFANNKL RPRPASPSPS PSGTSAAIVV GVAAGAALLF ALAWWLRRKL 240
  241 QGHFLDVPAE EDPEVYLGQF KRFSLRELLV ATEKFSKRNV LGKGRFGILY KGRLADDTLV 300
  301 AVKRLNEERT KGGELQFQTE VEMISMAVHR NLLRLRGFCM TPTERLLVYP YMANGSVASC 360
  361 LRERPEGNPA LDWPKRKHIA LGSARGLAYL HDHCDQKIIH LDVKAANILL DEEFEAVVGD 420
  421 FGLAKLMNYN DSHVTTAVRG TIGHIAPEYL STGKSSEKTD VFGYGVMLLE LITGQKAFDL 480
  481 ARLANDDDIM LLDWVKEVLK EKKLESLVDA ELEGKYVETE VEQLIQMALL CTQSSAMERP 540
  541 KMSEVVRMLE GDGLAERWEE WQKEEMPIHD FNYQAYPHAG TDWLIPYSNS LIENDYPSGP 600
  601 R

Type	Start	End	Confidence
Signal Peptide	1	24	0.37
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	212	0.75
Transmembrane Helix	213	236	0.90
Cytoplasmic	237	601	0.72