YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23466337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATILATD PTPICTTTEP GLIGTITDWL IMLMETIGGI GVALAIALES IFPPIPSEVI  60
   61 LPLSGFTAAR GTLSLPGAII WATIGSVLGA WTLYGISRWV GLHRINLAAD KIPGVSRKDV 120
  121 SKANDWFTKY GTWSVLIGRV IPVVRSLISI PAGFNRMNFL HFTGWTLLGS AVWNTILVSA 180
  181 GYLLGDQWCS IQGALGVFED VVIAAVIVVI VWFVVRKVRT VIRNRKSADG NE

Type	Start	End	Confidence
Cytoplasmic	1	28	0.72
Transmembrane Helix	29	52	0.83
Non-Cytoplasmic	53	72	0.64
Transmembrane Helix	73	95	0.88
Cytoplasmic	96	161	0.72
Transmembrane Helix	162	184	0.87
Non-Cytoplasmic	185	193	0.85
Transmembrane Helix	194	215	0.92
Cytoplasmic	216	232	0.95