YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71361647, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRYVAVGM ILSQTVVGVL GSFSVLLHYL SFYCTGCRLR STDLIVKHLI VANFLALRCK  60
   61 GVPQTMAAFG VRYFLNALGC KLVFYLHRVG RGVSIGTTCL LSVFQVITVS SRKSRWAKLK 120
  121 EKAPKHVGFS VLLCWIVCML VNIIFPMYVT GKWNYTNITV NEDLGYCSGG GNNKIAQTLR 180
  181 AMLLSFPDVL CLGLMLWVSS SMVCILHRHK QRVQHIDRSN LSPRASPENR ATQSILILVS 240
  241 TFVSSYTLSC LFQVCMALLD NPNSLLVNTS ALMSVCFPTL SPFVLMSCDP SVYRFCFAWK 300
  301 R

Type	Start	End	Confidence
Cytoplasmic	1	7	0.49
Transmembrane Helix	8	32	0.82
Non-Cytoplasmic	33	88	0.57
Transmembrane Helix	89	109	0.85
Cytoplasmic	110	126	0.90
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	185	0.93
Transmembrane Helix	186	206	0.89
Cytoplasmic	207	233	0.92
Transmembrane Helix	234	257	0.88
Non-Cytoplasmic	258	268	0.76
Transmembrane Helix	269	288	0.84
Cytoplasmic	289	301	0.74