YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32479362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPACNPSDR QEWQNLVTFG SFSNVVPCSH PYIGTLSQVK LYSTNVQKEG QGSQTLRVEK  60
   61 VPSFETAEGI GAELKAPLKQ EPLQVRVKAV LKKREYGSKY TQNNFITGVR AINEFYLKSS 120
  121 DLEQLRKIRR RSPHEDTESF TVYLRSDVEA KSLEVWGSPE ALAREKKLRK EAEIEYRERL 180
  181 FRNQKILREY RDFLGNTKPR SRTASVFFKG PGKVVMVAIC INGLNCFFKF LAWIYTGSAS 240
  241 MFSEAIHSLS DTCNQGLLAL GISKSVQTPD PSHPYGFSNM RYISSLISGV GIFMMGAGLS 300
  301 WYHGVMGLLH PQPIESLLWA YCILAGSLVS VGATLLVAVN ELRRNARAKG MSFYKYVMES 360
  361 RDPSTNVILL EDTAAVLGVI IAATCMGLTS ITGNPLYDSL GSLGVGTLLG MVSAFLIYTN 420
  421 TEALLGRSIQ PEQVQRLTEL LENDPSVRAI HDVKATDLGL GKVRFKAEVD FDGRVVTRSY 480
  481 LEKQDFDQML QEIQEVKTPE ELETFMLKHG ENIIDTLGAE VDRLEKELKK RNPEVRHVDL 540
  541 EIL

Type	Start	End	Confidence
Cytoplasmic	1	281	0.61
Transmembrane Helix	282	304	0.89
Non-Cytoplasmic	305	316	0.86
Transmembrane Helix	317	339	0.95
Cytoplasmic	340	367	0.89
Transmembrane Helix	368	392	0.82
Non-Cytoplasmic	393	399	0.74
Transmembrane Helix	400	419	0.94
Cytoplasmic	420	543	0.92