YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX2_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLDVPTPW GIRLQDSATP NAEGIHELYD HIMFYLCLIL GLVSYILYVI IKDYKDNRFA  60
   61 YKYVRHGQVI EIIWTIFPAV ILLLIAFPSF ILLYLCDEVL TPAMTIKVIG LQWYWKYEYS 120
  121 DFVDSIGETI EFESYVIPDD MLEPGALRLL DTDTSIVVPV DTHIRFVVTA NDVIHSFTIP 180
  181 SLGMKIDATP GRLNQVSALI QRTGVYYGQC SELCGVNHGM MPIKLECVSI EDFIEWLGEN 240
  241 EVSLNSSMVE QCTVNALILV QF

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.83
Transmembrane Helix	31	51	0.95
Cytoplasmic	52	71	0.79
Transmembrane Helix	72	94	0.92
Non-Cytoplasmic	95	262	0.80