YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRFPQNVY FLARYSYLRR FQHSQRRTFS SFLNNIRSNY SGARASPLGG SSGAGAGAGG  60
   61 GGTGDSKGNA FLVPGATMAT ILMLGALHAR RLYEDKKIEE KREKGIELEF HPDIKASFLG 120
  121 VLPLRSISRA WGSFMSLEIP VWMRPYAYKA WARAFHSNLE EAALPLEEYT SLQDFFVRSL 180
  181 KEGCRPIDPD PCCLVSPVDG TVLRFGELKG NRGMIEQVKG HSYSVPALLG NNSLLPMEPE 240
  241 GKNESKEEAV GDKSDKSWLR VSLASPKLRE NVSASPMKGL YYCVIYLKPG DYHRIHSPAD 300
  301 WNATVRRHFA GRLFPVNERA TRTIRNLYVE NERVVLEGIW KEGFMALAAV GATNIGSIEL 360
  361 FIEPELRTNK PKKKLFPTEP PEERVYDPEG LGLRLEKGKE VAVFNMGSTV VLIFQAPTAN 420
  421 TPEGSSSSSD YRFCVKQGDR VRVGQALGRW KEE

Type	Start	End	Confidence
Cytoplasmic	1	41	0.65
Transmembrane Helix	42	61	0.57
Non-Cytoplasmic	62	69	0.79
Transmembrane Helix	70	89	0.69
Cytoplasmic	90	400	0.57
Transmembrane Helix	401	416	0.17
Non-Cytoplasmic	417	453	0.65