YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14247818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.70
Transmembrane Helix	5	23	0.71
Cytoplasmic	24	39	0.91
Transmembrane Helix	40	61	0.93
Non-Cytoplasmic	62	72	0.74
Transmembrane Helix	73	94	0.91
Cytoplasmic	95	104	0.71
Transmembrane Helix	105	127	0.87
Non-Cytoplasmic	128	148	0.96
Transmembrane Helix	149	168	0.95
Cytoplasmic	169	198	0.93
Transmembrane Helix	199	220	0.91
Non-Cytoplasmic	221	247	0.96
Transmembrane Helix	248	267	0.96
Cytoplasmic	268	286	0.88
Transmembrane Helix	287	309	0.89
Non-Cytoplasmic	310	316	0.87
Transmembrane Helix	317	339	0.91
Cytoplasmic	340	359	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWMIFSGLIV GGLLGYVMQR TRFCLTGGFR DMYVQKNNKM FYALLIAITI QSIGLLILTA  60
   61 TDILQIPAHS FPILGTIIGS FIFGIGIVLT GGCATGTWYR AGEGLIGSWI ALVLYAVTAA 120
  121 ITKTGILKPV MDKINQPTNV NSDMSQTTGI PFWGLVVILT IITIFLVVRT LNNKKVRVAV 180
  181 PKLKQRYTGI RYYLFEKRYH PFIAAIVIGL IALLAWPMSA STGRNDGLGI TTPSANLVHF 240
  241 LITGETKFID WGVFLVLGIF IGSYIAARGS REFKWRLPDK ITIRNSAIGG ICMGFGASVA 300
  301 GGCSIGNGLV ETATMTWQGW IALASMIVGV WTMSHFIFVR PMKKVQQQSA KVKQQTQIV