YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|241769614, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLENIILK NYEEELFDHE VYSKLAEVER DPELKKTLFK LAEMEKKHSE FWREIAEKRG  60
   61 LKVKGKLSTL NKIKVDFYSL LRKILGLDIT IKVLESSEED DIEKYRKLSE MEMFSSEEKQ 120
  121 RLKDIMVDEA VHEKVLGNVE AKSVGDFVYG ISDGLVEVLA AVSGLSGAIS SPLFVAVGGL 180
  181 IVGVSGTLSM AIGAYLSTKS EKDVKIQERK RLELEKNVDQ HSVQLRLVNF FTELGVNLNL 240
  241 AKKVSLSLVN VAEDILYPEV KENPVKSALI TGLSYITGAI IPILPYLIGL SGLTGLITSY 300
  301 IVAGLSTFIV GSIIGILSGI SPFKKGIQMA SLALLAALGT HGLGYLASRF LNVSI

Type	Start	End	Confidence
Cytoplasmic	1	146	0.54
Transmembrane Helix	147	165	0.47
Non-Cytoplasmic	166	172	0.67
Transmembrane Helix	173	196	0.87
Cytoplasmic	197	267	0.95
Transmembrane Helix	268	289	0.89
Non-Cytoplasmic	290	295	0.76
Transmembrane Helix	296	320	0.87
Cytoplasmic	321	328	0.76
Transmembrane Helix	329	348	0.90
Non-Cytoplasmic	349	355	0.80