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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCA2_RICCN
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQNSHSKK YVLTFFMSTC LLTSSFLSTS ARAASFKDLV SKTPAWEKHN STQQQNIWKD  60
   61 LTPNEKIKKW QEAALVPSFT QAQNDLGIKY KETDLSSFLD NTRHKARQAR AEILLYIERV 120
  121 KQQDFDTKKQ AYINQGVVPT DIEAATNLGI SYDPSKIDNN VEHDQKVRRA EKDKKAVIEL 180
  181 YVSSINRGIK YKHYVDNDII PEIQEVRTAL NMNKDDAQSF VASIRTEIME NAKGQYIADS 240
  241 HIPTEKELKK KFGISRDDNR DGYIKSIRLK VMDKEKPQYI ADSHIPTEKE LEQKFGADKG 300
  301 EATNYIASIA TQMMLDKKSY YIDNNIIPNA DELMNEFKIG PVKATSYINQ IRAGIEANQF 360
  361 LNNNDTTKPS TGRSQKKSGS KNDHWYMSNQ SINNTGTSAR IVTGREKKQR YFFDPISTFK 420
  421 TYFNTKASKG NLTQSQHNIN RIIQQEENIE EFKNLIKTDP IAALTLQVDS SYKQEAVTTI 480
  481 LSDFNDDTIQ RVLFSNDKGK LDFNTNIDVK NRPILQELLE NSSSEEKTKF AERIQDYATR 540
  541 NISNSQFEEK ARLDLIKLAA SKDKSSVENF LTLQLELKNR MQPYVVNSVY ILTPEIVKEI 600
  601 NIELKNKGLI RDSLTKDYMI KLAKEVNNHT LNSVIKVILS DSKILSNETN KILGLAVSNN 660
  661 ANNLEQTQSG IPNPPPLPLN GGIPNPPPLP LNGSMPPPPL HSQGFSSNSK HFDLNQLQTE 720
  721 YPHIHSLYVQ FTHNTTVQSK APLQPTASSA TSTGRSTPET AYAKLYAEYR TETGGTKAND 780
  781 LQDQLIKRQA DLTNVIRQIL TESYANQGAD EKTLLNLFSI STPEIAEKAK EAFNTLAQDQ 840
  841 YIKDITVNGK KTITSEEIIK NLFNEDTDDA IKRILLSSCK ISEELKRPIK LEFNKSELIR 900
  901 ELQGKQNPFK QLEFAYINTK NFDQDIFGNR IDELINNPNI LTIVQQATFL TKEDTNLRKT 960
  961 INSDQAQAKL DDLRTAILST IKIEELITAN LPQHDFIAIV KEKDPELLKE FLKATTLTVT1020
 1021 GNNNLDQLRL ALPSFTGMSN EQIRILSNKL KMSIILKALK ECSQEKATQY IHTGNMPPPP1080
 1081 PPPPPLPDSQ DLELAYLKSL GITKANTSTF KTTPKTYHFS SDIALRYKEF TLSGQKSAGY1140
 1141 KAKYSDADLL KKAIVESVAF EHSKNLSKAH QNNKYFEQIQ KAVNTMYSSF IGHRTELEQK1200
 1201 IHNIYTSKLL ELTKDKEFIK YVEDNIILNK KLTKAFTSAD SDFIDSRTEL EQKIHNIYIQ1260
 1261 QLTKYPEEEV KEAFNTASLD FIGPRTEIGQ EVHNIYKSQL LELTKDTELC LFTQQVLAEA1320
 1321 TELEQKYGSD IQSENSNNEK KVERLDQEKL QLFKQENEAT NDESSTKDDT QPEDSNKKSE1380
 1381 QSDSKTALSP RLLSSNDSKN DKSSDDKKSL LALRSSDEDD TGYATDEEEL EESNSTTDEE1440
 1441 LKKDVVLESE DEAIDVSFKT EAITEQDEVT QRQQVSDDTS GKVAILVQAT STLHKPVHYN1500
 1501 INDRLTVAAI GAGDEETSIN RGVWISGLYG INKQRIWKNI PKYQNRTTGI TIGTDAEFIN1560
 1561 SHDVIGIAYS RLESQIKYNK KLGKTTVNGH LLSIYSLKEL IKGFSLQTIT SYGHNYIKNR1620
 1621 SKNINNIIGK YQNNSLSFQT LLNYKYRTKY DLHFIPNIGF QYDYSRASNY KEYNVDIENL1680
 1681 MIQKKSNQLF ESSLGGKIVF KPIVTTNNIV LTPSLYGNIE HHFNNKNTKV NAKATFKGQT1740
 1741 LQETIITLKQ PKLGYNIGSN ILMSRKNINV LLEYNYYTHR KYQSHQGLIK LKVNL

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