YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|208821589, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHYLNNTQ HVYDKGRVMQ TEQQRAVTRL CIQCGLFLLQ HGAESALVDE LSSRLGRALG  60
   61 MDSVESSISS NAIVLTTIKD GQCLTSTRKN HDRGINMHVV TEVQHIVILA EHHLLDYKGV 120
  121 EKRFSQIQPL RYPRWLVALM VGLSCACFCK LNNGGWDGAV ITFFASTTAM YIRQLLAQRH 180
  181 LHPQINFCLT AFAATTISGL LLQHPTFSNT PTIAMAASVL LLVPGFPLIN AVADMFKGHI 240
  241 NTGLARWAIA SLLTLATCVG VVMALTIWGL RGWV

Type	Start	End	Confidence
Cytoplasmic	1	131	0.98
Transmembrane Helix	132	151	0.92
Non-Cytoplasmic	152	157	0.73
Transmembrane Helix	158	177	0.88
Cytoplasmic	178	184	0.88
Transmembrane Helix	185	204	0.94
Non-Cytoplasmic	205	212	0.73
Transmembrane Helix	213	233	0.94
Cytoplasmic	234	246	0.82
Transmembrane Helix	247	268	0.94
Non-Cytoplasmic	269	274	0.80