YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25350716
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKNTPKLA YAILNAISLS ADGDGDWCQI MPAGRVKARD GRPEKPAEGW LINHAAVERM  60
   61 VSRVVALNQP VKIDYNHQTL IEGHPAPAAG FVMASPENFR FSEERGFEVR PKWNPPALEH 120
  121 LRNNEFPWFS PVIGYDESTG EPVELRMLAI TGDPGLTGMN PVAALSADDL YNALNPPLKD 180
  181 TSMNEQLRQL LTALGLTVAD GDEFTPELGT AALSALTGIK TRADAHDNLK TQVASLSAEL 240
  241 ETAKGTPAGG IIDLTKYVPV ETYNALRTEY VALSAQHGST TLEQVLDKAE SEGRIFKSER 300
  301 GYLEQLGGQI GVAALSAQLD ARQPVAALTS LQTDTVTVPD KKTATAALSA EDIAAAKLLG 360
  361 KTEAEFLKMK EEMQ

Type	Start	End	Confidence
Signal Peptide	1	23	0.86
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	374	0.99