YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|217329596, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.87
Transmembrane Helix	5	24	0.87
Cytoplasmic	25	41	0.91
Transmembrane Helix	42	64	0.93
Non-Cytoplasmic	65	73	0.82
Transmembrane Helix	74	99	0.82
Cytoplasmic	100	105	0.81
Transmembrane Helix	106	128	0.86
Non-Cytoplasmic	129	150	0.88
Transmembrane Helix	151	169	0.95
Cytoplasmic	170	197	0.97
Transmembrane Helix	198	218	0.92
Non-Cytoplasmic	219	246	0.95
Transmembrane Helix	247	266	0.96
Cytoplasmic	267	286	0.86
Transmembrane Helix	287	309	0.90
Non-Cytoplasmic	310	317	0.75
Transmembrane Helix	318	338	0.95
Cytoplasmic	339	352	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMILSGLI CGALLGFVMQ RGRFCLTGGF RDMYIAKNNR MFYALLIAIS VQSVGVFALI  60
   61 QAGLLTYEAG AFPWLGTVIG GYLFGLGIVL AGGCATGTWY RAGEGLIGSW IALFTYMVMS 120
  121 AVMRSPHASG LNQTLQHYTT EHNSIAETFN LSVWPLVAVL LVITLWVVMK ELKKPKLKVA 180
  181 TLPPRRTGIA HILFEKRWHP FVTAVLIGLI ALLAWPLSEA TGRMFGLGIT SPTANILQFL 240
  241 VAGDVKYINW GVFLVLGIFV GAFIAAKASR EFRVRAADAQ TTVRSGLGGV LMGFGASIAG 300
  301 GCSIGNGLVM TAMMTWQGWV GLVFMILGVW TASWLVYVRP QRKARLATAA AN