YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189359984, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKTIKYFS TIIVAVVAVL AGWWLWNYYM QSPWTRDGKI RAEQVSITPQ VSGRIVELNI  60
   61 KDNQLVNAGD LLLTIDKTPF QIAELNAQAQ LAKAQSDLAK ANNEANRRRH LSQNFISAEE 120
  121 LDTANLNVKA MQASVDAAQA TLKQTQWQLA QTEIRAPVSG WVTNLTTRIG DYADTGKPLF 180
  181 ALVDSHSFYV IGYFEETKLR HIREGAPAQI TLYSDNKTLQ GHVSSIGRAI YDQSVESDSS 240
  241 LIPDVKPNVP WVRLAQRVPV RFALDKVPGD VTLVSGTTCS IAVGQ

Type	Start	End	Confidence
Cytoplasmic	1	7	0.80
Transmembrane Helix	8	26	0.91
Non-Cytoplasmic	27	285	0.93