YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194438030, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVPFLIMLR EGLEAALIVS LIASYLKRTQ RGRWIGVMWI GVLLAAALCL GLGIFINETT  60
   61 GEFPQKEQEL FEGIVAVIAV VILTWMVFWM RKVSRNVKVQ LEQAVDSALQ RGNHHGWALV 120
  121 MMVFFAVARE GLESVFFLLA AFQQDVGIWP PLGAMLGLAT AVVLGFLLYW GGIRLNLGAF 180
  181 FKWTSLFILF VAAGLAAGAI RAFHEAGLWN HFQEIAFDMS AVLSTHSLFG TLMEGIFGYQ 240
  241 EAPSVSEVAV WFIYLIPALV AFALPPRAGA TASRSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.65
Transmembrane Helix	7	26	0.67
Cytoplasmic	27	34	0.90
Transmembrane Helix	35	56	0.95
Non-Cytoplasmic	57	69	0.93
Transmembrane Helix	70	89	0.94
Cytoplasmic	90	116	0.86
Transmembrane Helix	117	140	0.77
Non-Cytoplasmic	141	147	0.88
Transmembrane Helix	148	171	0.89
Cytoplasmic	172	179	0.84
Transmembrane Helix	180	203	0.88
Non-Cytoplasmic	204	247	0.61
Transmembrane Helix	248	270	0.85
Cytoplasmic	271	276	0.49