YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32264637
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.72
Transmembrane Helix	18	42	0.78
Non-Cytoplasmic	43	49	0.54
Transmembrane Helix	50	69	0.91
Cytoplasmic	70	78	0.58
Transmembrane Helix	79	103	0.76
Non-Cytoplasmic	104	112	0.60
Transmembrane Helix	113	134	0.91
Cytoplasmic	135	142	0.64
Transmembrane Helix	143	163	0.94
Non-Cytoplasmic	164	170	0.57
Transmembrane Helix	171	188	0.85
Cytoplasmic	189	198	0.74
Transmembrane Helix	199	221	0.93
Non-Cytoplasmic	222	237	0.76
Transmembrane Helix	238	261	0.69
Cytoplasmic	262	298	0.87
Transmembrane Helix	299	318	0.92
Non-Cytoplasmic	319	700	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITAGLIHWI LNTLNITVHI RDVCVFLAPT FSGLTSISTF LLTRELWNQG AGLLAACFIA  60
   61 IVPGYISRSV AGSFDNEGIA IFALQFTYYL WGHSGVVLCF PAHRSPGPFG SSGHSLTISL 120
  121 VAAALPSGAL VHVARPELYR VSAWGGYVFI INLIPLHVFV LLLMQRYSKR VYIGVFALLQ 180
  181 AYAFLQYLRD RLTKQEFQTL FFLGVSLAAG AVFLSVIYLT YTGMQKYTFQ LLHQCLNISL 240
  241 RHGCLSSLIY IFLCVPSQQA YGSASKISTM KEYLAGKVRK HVTEQEKPEE GLGPNIKSIV 300
  301 TMLMLMLLMM FAVHCTWVTS NAYSSPSVVL ASYNHDGTRN ILDDFREAYF WLRQNTDEHA 360
  361 RVMSWWDYGY QIAGMANRTT LVDNNTWNNS HIALVGKAMS SNETAAYKIM RSLDVDYVLV 420
  421 IFGGVIGYSG DDINKFLWMV RIAEGEHPKD IREGDYFTQQ GEFRVDRAGS PTLLNCLMYK 480
  481 MSYYRFGEMQ LDFRTPPGFD RTRNAEIGNK DIKFKHLEEA FTSEHWLVRI YKVKAPDNRE 540
  541 TLGHKPRVTN IFPKQKYLSK KDLAASTEER GPHTQGLTVL SEEEQKKGWR LSVSGILGSE 600
  601 ENVLPDCGQH HSTDHSNLHQ EQGQMWTDNL GLGSEQVSAK GGHSPFCQDR APFSDRDFNR 660
  661 LCPFSLHWDM SWQNCGNVRK NTESREQKGA QDYPGQPRRV