YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTN4R_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRASSGGSR LLAWVLWLQA WRVATPCPGA CVCYNEPKVT TSCPQQGLQA VPTGIPASSQ  60
   61 RIFLHGNRIS YVPAASFQSC RNLTILWLHS NALAGIDAAA FTGLTLLEQL DLSDNAQLRV 120
  121 VDPTTFRGLG HLHTLHLDRC GLQELGPGLF RGLAALQYLY LQDNNLQALP DNTFRDLGNL 180
  181 THLFLHGNRI PSVPEHAFRG LHSLDRLLLH QNHVARVHPH AFRDLGRLMT LYLFANNLSM 240
  241 LPAEVLVPLR SLQYLRLNDN PWVCDCRARP LWAWLQKFRG SSSEVPCNLP QRLAGRDLKR 300
  301 LAASDLEGCA VASGPFRPFQ TNQLTDEELL GLPKCCQPDA ADKASVLEPG RPASAGNALK 360
  361 GRVPPGDTPP GNGSGPRHIN DSPFGTLPGS AEPPLTALRP GGSEPPGLPT TGPRRRPGCS 420
  421 RKNRTRSHCR LGQAGSGSSG TGDAEGSGAL PALACSLAPL GLALVLWTVL GPC

Type	Start	End	Confidence
Signal Peptide	1	29	0.90
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	447	0.99
Transmembrane Helix	448	470	0.60
Cytoplasmic	471	473	0.55