YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11353849
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFFKRLFD IVASASGLIF LSPVFLILIY LIRKNLGSPV FFFQERPGKD GKPFKMVKFR  60
   61 SMHDALDSDG ILLPDGERLT PFGKKLRAAS LDELPELWNV LKGDMSLVGP RPLLMQYLPL 120
  121 YDNFQNRRHE MKPGITGWAQ VNGRNALSWD ERFACDIWYI DHFSLCLDIK ILLLTVKKVL 180
  181 IKEGISAQGE ATMPPFTGKR KLAVVGAGGH GKVVAELAAA LGTYGEIVFL DDRVQGSVNG 240
  241 FPVIGTTLLL ENSLSPEQFD IAVAVGNNRI RRQIAEKAAA LGFALPVLIH PDSTVSPSAT 300
  301 VGQGGVVMAK AVVQADSVLK DGVIVNTAAT VDHDCLLDAF VHISPGAHLS GNTRIGEESW 360
  361 IGTGACSRQQ IRIGSRATIG AGAVVVRDVS DGMTVAGNPA KPLAGKNTET LRS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.81
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	413	0.99