YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7482080
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAGMYPSQP DQVKSKPTYI LNYFINPMTG SDILGLLMVY VYVAVLLLVS ERFLGDRPNL  60
   61 SRKFVHIMVG NILFILPLFE SRLVITFLAA APFILITFLL SPYSPLRVKH RASSYGHGLG 120
  121 LVYYSISWTI LAYLFFEAPW ITGIGIAAMS YGDGFASLTG ERFGRTTFSV LGDKKSLEGS 180
  181 LGMFIILLVM LPVVLTYYSQ GFTPYLILGV ALVSTVLEAL TPRGLDNLTA CFGAVAAYIL 240
  241 LGGMGI

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.82
Transmembrane Helix	29	50	0.85
Cytoplasmic	51	59	0.72
Transmembrane Helix	60	79	0.76
Non-Cytoplasmic	80	83	0.76
Transmembrane Helix	84	104	0.90
Cytoplasmic	105	114	0.79
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	139	0.75
Transmembrane Helix	140	160	0.86
Cytoplasmic	161	178	0.82
Transmembrane Helix	179	198	0.90
Non-Cytoplasmic	199	201	0.63
Transmembrane Helix	202	221	0.54
Cytoplasmic	222	224	0.48
Transmembrane Helix	225	245	0.79
Non-Cytoplasmic	246	246	0.55