YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15678920, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	42	0.95
Non-Cytoplasmic	43	55	0.75
Transmembrane Helix	56	74	0.89
Cytoplasmic	75	94	0.82
Transmembrane Helix	95	114	0.95
Non-Cytoplasmic	115	120	0.84
Transmembrane Helix	121	140	0.96
Cytoplasmic	141	152	0.77
Transmembrane Helix	153	174	0.85
Non-Cytoplasmic	175	196	0.77
Transmembrane Helix	197	216	0.93
Cytoplasmic	217	232	0.88
Transmembrane Helix	233	251	0.92
Non-Cytoplasmic	252	264	0.75
Transmembrane Helix	265	286	0.93
Cytoplasmic	287	296	0.80
Transmembrane Helix	297	320	0.86
Non-Cytoplasmic	321	324	0.79
Transmembrane Helix	325	348	0.89
Cytoplasmic	349	365	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGDSCSLDG DICPSRLGFL DKYLTLWIFL AMAAGVSIGY FFPESRQFIN MFQVDTTSLP  60
   61 IAIGLILMMY PPLAKVHYED LPDVFRNFRI LGLSLLQNWI IGPVLMFILA IVFLMDHPEY 120
  121 MIGLILIGLA RCIAMVIVWN ELAMGDREYA AGLVAFNSLF QVFFYSIYAW VFITLLPPLF 180
  181 GVQGTAIDVS IFEIAKSVFI YLGIPFIAGF LTRYILRRRK GSEWYDTRFI PRISPLTLMA 240
  241 LLFTIVVMFS LKGDYIVQIP FDVLLIAIPL IIYFVFMFLI SFILAYSVGA DYSKSCAISF 300
  301 TAASNNFELA IAVAVAVFGI DSGVAFAAVV GPLIEVPVLI SLVNVALYFQ RRLYKRVKPE 360
  361 NSLFH