YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.93
Transmembrane Helix	34	56	0.89
Non-Cytoplasmic	57	63	0.64
Transmembrane Helix	64	85	0.78
Cytoplasmic	86	119	0.70
Transmembrane Helix	120	141	0.65
Non-Cytoplasmic	142	182	0.43
Transmembrane Helix	183	206	0.91
Cytoplasmic	207	216	0.74
Transmembrane Helix	217	235	0.60
Non-Cytoplasmic	236	241	0.45
Transmembrane Helix	242	260	0.55
Cytoplasmic	261	279	0.89
Transmembrane Helix	280	302	0.95
Non-Cytoplasmic	303	320	0.94
Transmembrane Helix	321	342	0.86
Cytoplasmic	343	383	0.91
Transmembrane Helix	384	404	0.88
Non-Cytoplasmic	405	408	0.72
Transmembrane Helix	409	430	0.82
Cytoplasmic	431	440	0.83
Transmembrane Helix	441	466	0.85
Non-Cytoplasmic	467	480	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVQNVQDLD VLPKHSSDSF DDDGRPKRTG TVWTASAHII TAVIGSGVLS LAWAVAQIGW  60
   61 IGGPVAMLLF SFVTFYTSTL LCSCYRSGDS VTGKRNYTYM DAIHSNLGGI KVKVCGVVQY 120
  121 VNLFGTAIGY TIASAISLVA IQRTSCQQMN GPNDPCHVNG NVYMIAFGIV QIIFSQIPDF 180
  181 DQLWWLSIVA AVMSFAYSAI GLGLGVSKVV ENKEIKGSLT GVTVGTVTLS GTVTSSQKIW 240
  241 RTFQSLGNIA FAYSYSMILI EIQDTVKSPP AEVNTMRKAT FVSVAVTTVF YMLCGCVGYA 300
  301 AFGDNAPGNL LAHGGFRNPY WLLDIANLAI VIHLVGAYQV YCQPLFAFVE KEASRRFPES 360
  361 EFVTKEIKIQ LFPGKPFNLN LFRLVWRTFF VMTTTLISML MPFFNDVVGL LGAIGFWPLT 420
  421 VYFPVEMYIA QKNVPRWGTK WVCLQVLSVT CLFVSVAAAA GSVIGIVSDL KVYKPFQSEF 480
  481