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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38490177, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFAVLPPEI NSARLYVGAG LAPMLDAAAA WDGLADELGS AAASFSAVTA GLAGSSWLGA  60
   61 ASTAMTGAAA PYLGWLSAAA AQAQQAATQT RLAAAAFEAA LAATVHPAII SANRALFVSL 120
  121 VVSNLLGQNA PAIAATEAAY EQMWAQDVAA MFGYHAGASA AVSALTPFGQ ALPTVAGGGA 180
  181 LVSAAAAQVT TRVFRNLGLA NVGEGNVGNG NVGNFNLGSA NIGNGNIGSG NIGSSNIGFG 240
  241 NVGPGLTAAL NNIGFGNTGS NNIGFGNTGS NNIGFGNTGD GNRGIGLTGS GLLGFGGLNS 300
  301 GTGNIGLFNS GTGNVGIGNS GTGNWGIGNS GNSYNTGFGN SGDANTGFFN SGIANTGVGN 360
  361 AGNYNTGSYN PGNSNTGGFN MGQYNTGYLN SGNYNTGLAN SGNVNTGAFI TGNFNNGFLW 420
  421 RGDHQGLIFG SPGFFNSTSA PSSGFFNSGA GSASGFLNSG ANNSGFFNSS SGAIGNSGLA 480
  481 NAGVLVSGVI NSGNTVSGLF NMSLVAITTP ALISGFFNTG SNMSGFFGGP PVFNLGLANR 540
  541 GVVNILGNAN IGNYNILGSG NVGDFNILGS GNLGSQNILG SGNVGSFNIG SGNIGVFNVG 600
  601 SGSLGNYNIG SGNLGIYNIG FGNVGDYNVG FGNAGDFNQG FANTGNNNIG FANTGNNNIG 660
  661 IGLSGDNQQG FNIASGWNSG TGNSGLFNSG TNNVGIFNAG TGNVGIANSG TGNWGIGNPG 720
  721 TDNTGILNAG SYNTGILNAG DFNTGFYNTG SYNTGGFNVG NTNTGNFNVG DTNTGSYNPG 780
  781 DTNTGFFNPG NVNTGAFDTG DFNNGFLVAG DNQGQIAIDL SVTTPFIPIN EQMVIDVHNV 840
  841 MTFGGNMITV TEASTVFPQT FYLSGLFFFG PVNLSASTLT VPTITLTIGG PTVTVPISIV 900
  901 GALESRTITF LKIDPAPGIG NSTTNPSSGF FNSGTGGTSG FQNVGGGSSG VWNSGLSSAI 960
  961 GNSGFQNLGS LQSGWANLGN SVSGFFNTST VNLSTPANVS GLNNIGTNLS GVFRGPTGTI1020
 1021 FNAGLANLGQ LNIGSANLGD FNLGSGNVGS FNVFSGNQGS YNIGPANLGN YNIGFANLGN1080
 1081 YNIGFGNAGD FNQGFANTGN NNIGFANTGN NNIGIGLSGD NQQGFNFAGG WNSGTANIGL1140
 1141 FNSGTNNVGI GNSGTGNWGI GNSGSGNTGI GNTGSTNTGF FNTGIVNTGV ANAGSYNTGW1200
 1201 YNTGDTNTGI ANLGDFNTGF YNTGNFSTGF ANQGDIATGA FITGDMGNGA FWRGDQQGLF1260
 1261 SAGYRVHVPE IPAHVTVEVP VNIPITASFT NTVYSGITLE QINFGFTIDI AGIPLLAGAI1320
 1321 SKAVLPPITG TGPAITVNIG DPGGSTAIRI PATASVGPFD VTFVNIAATT GFFNATTDPS1380
 1381 SGFFNGGPGT VSGIANIGAN ISGFQNVANS ATSGFNNYGS LQSGLANLGD TVSGVFNTGI1440
 1441 GAPANVSGMF NIGSNLAGFF HDQATGMSMF NLGLGNIGQF NVGFSNVGDS NAGLANIGSF1500
 1501 NLGSGNLGSF NVFGGNQGSY NIGPANLGNY NIGLGNLGSY NFGFGNAGDF NLGFANTGNN1560
 1561 NIGFANTGNN NIGIGLSGDN QQGFNFAGGW NSGSGNSGLF NSGTNNIGLF NSGTGNIGIG1620
 1621 NSGTGNWGIA NTGDTNTGIF NTGDVNTGLL NAGNVNTGIF NTGHYNTGSF NAGSFNTAGF1680
 1681 NPGSYNTGYL NTGSYNTGLA NSGDVNTGGF ITGNYSNGFW WRGDYQGLAG ISQTITVPDT1740
 1741 AVPVKLHVPI FLDIPVTGTL GTFTVHGFRF PEITGDIFLI GIPFNAATLD AFSFPNISIV1800
 1801 LPNIGINLGS GPDPLIDIAG TGGLLPIKIP LIDIPAAPGF GNSTTTPSSG FFNAGTGTVS1860
 1861 GVGNVGSNSS GFFNLTSGSS GISGVQNFGE LISGGFNFGN TVSGLVNAST LGLSMPANLS1920
 1921 GGGNVGATVA GFVNNTQILN LGFGNVGSGN VGHGNIGDSN VGLGNLGNAN VGHGNIGSFN1980
 1981 VFSGNRGSYN IGPANLGNYN IGLGNLGSYN FGFGNAGDFN LGFANSGSNN IGFANTGNNN2040
 2041 IGIGLSGHNQ QGFGSWNSGT ANTGLFNSGT NNIGLFNSGT GNIGIGNSGI GNTGIGNPGV2100
 2101 GNTGLGNSGT GNWGLWNPGT GNMGVANVGT YNTGGYNVGS TNTGIANVGI ANTGSYNTGS2160
 2161 TNTGSFNDGD FNTGFYNTGD YNTGFYNTGD VNTGAFIGGN FSNGAFWQSD HQGQWGAHYA2220
 2221 ITVPQIPLLN FSLNIPVNIP IHLDFGTLAV NGFQIPAITL RALGVTHFSV GPIIVPRIAG2280
 2281 TLPVIDINIG DPGGSSSIPI TITSGAGPVV IPLLDIPPAP GFGNSTTGPS SGFFNSGTGS2340
 2341 SSGFGNVGAN NSGFWNTAFA GIGNSGLQNF GSLQSGWANL GNTVSGFYNT SAADFATPAN2400
 2401 LSGLSNVGAD LTGVLRGPNG STFNAGLANL GQFNVGSANL GSANLGSANL GSANLGNSNV2460
 2461 GFGNIGNANI GGANIGDFNV GIANTGPGLT AAVNNIGIGN TGNYNIGVGN TGNYNIGFGN2520
 2521 TGNNNIGIGL SGDNQIGFGP LNAGIANMGL FNLGDNNFGM ANAGNFNQGI ANTGNNNIGL2580
 2581 FNTGNNNVGI WLTGDGLSGF SSLNSGAGNT GFFNSGTANT GLFNSGTGNT GLFNSGTGNV2640
 2641 GIGNMGTGGF GVGLSGDSQV GIGGTNSGSF NIGLFNSGTG NVGIGNSGTG NVGIGNTGTG2700
 2701 NTGIGNSGNY NTGLLNAGLV NTGIANPGNH NTGLFNIGTF NTGIANPGHY NTGSYNTGSY2760
 2761 NTGMANAGDY GTGAFITGSM NNGLLWRADR QGLLAANYTI TIERPAAFLN VDIPVNIPIT2820
 2821 GDITNVSIPA ITFPRIDASG SVDIGILSGT VLAPVGPITL HGGDASAPLD TPIEIDFGPS2880
 2881 PAINLNIGKP DGSTVINIVG GAGAGPISIP IIDLRPAPGF FNATTGPSSG FLNWGAGSAS2940
 2941 GLLNFGNNSG LYNFATSSMG NSGFQNYGSL QSGWANLGNS ISGIYNTGLG APANVSGLLN3000
 3001 IGTNLAGWLQ NGPTETTFSV GLANLGFWNL GSANIGNYNL GSANIGVYNL GSANIGDFNL3060
 3061 GSANIGDFNL GSANIGSSNI GFGNVGPGLT AAIGNIGFGN TGNGNIGIGN TGTGNIGFGN3120
 3121 TGNGNIGIGL TGDTMTGFGG WNSGTGNIGL FNSGTGNIGF GNSGTGNWGI GNSGDYNTGI3180
 3181 GNTGSTNSGF FNTGLVNTGI GNSGDYNTGL FNAGNTNTGS FNPGDYNTGG FNPGNYNTGY3240
 3241 FNPGNSNTGI ANSGDVNTGA FNSGNYSNGF FWRGDYQGLG GFAYQSAVSE IPWSYDRFQH3300
 3301 

YRC Informatics Platform - Version 3.0
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