YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254240530, gi...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATSGGSGV EALSDEEVQR YVRHITLPGV GREGQQRLKQ ARVLIIGTGG LGSPACLYLA  60
   61 AAGVGTIGLV DFDVVESSNL QRQVVHGYST LGMPKVESAQ RRMQDLNPYI EVVTHRYAID 120
  121 ADNAQSLIQS YDLVLDGTDN FATRYLVNAV CAKLGKPLVF GAIYRFEGQV SVFNLEGGPC 180
  181 YQCLFPNNPP PEMAPSCNAG GVIGVLPGVI GLLQATEAVK ALVGLGKSLS GRLLRFDALL 240
  241 MHFNEVKFNR RDDCPACGKT AAENPRHWRE GLLCQASAAP SQRLDDDRYI DPGCLLQLMK 300
  301 SNSENYALLD VRDAGELEVC QLPGIVHVPL NELASHFANL DFSKRYILVC YAGTRAERAA 360
  361 IQLMGAGFSN VQVLDGGMKR WAKEIEQHMP MY

Type	Start	End	Confidence
Cytoplasmic	1	43	0.79
Transmembrane Helix	44	68	0.71
Non-Cytoplasmic	69	392	0.95