YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11352291
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLELFAAS LGAIAVYLTV RQNPWCWPIG LVMVALYAWI FFEVKLYSDM LLQMVYAALQ  60
   61 LYGWWQWTRG GQDHDGRSVS RLNAAQRLYG LGAGLVGSVA LGYLMANHTD AASPWWDAGL 120
  121 TAFSLVAQCW MAQKRLECWA LWIAVDVLFV ALFASKALYL TAALYALFTL LAIHGWRTWR 180
  181 RDPALREGVA A

Type	Start	End	Confidence
Cytoplasmic	1	22	0.81
Transmembrane Helix	23	42	0.88
Non-Cytoplasmic	43	49	0.71
Transmembrane Helix	50	68	0.84
Cytoplasmic	69	87	0.90
Transmembrane Helix	88	106	0.97
Non-Cytoplasmic	107	112	0.84
Transmembrane Helix	113	132	0.73
Cytoplasmic	133	137	0.74
Transmembrane Helix	138	155	0.74
Non-Cytoplasmic	156	157	0.48
Transmembrane Helix	158	178	0.79
Cytoplasmic	179	191	0.79