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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9947864, gi|1...
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQAKVTPI DQSISSAAAV EVPENGILKL SQSSNVALDV APESVAGYSK SGSDLIVQLK  60
   61 TGESVRIANF YAEGQPSSQL FLADKDKLVA VDLPPVAADG PLMAGYIPQE SLAGFESLTG 120
  121 AGVLGGMSAG TALLVGAAAI GAGVAISNSS GGGGGGGSSV PPDTTPPKAA SGLKIAPDGS 180
  181 SISGQAEAGA SVGIDTNGDG KPDLTVIADA NGNFTAPLNP PLTNGQTVTV VVTDPAGNAS 240
  241 PPAQVTAPDT TAPAPATDVQ VAPDGSSVTG KAEPGSTVGV DTDGDGQPDT TVVVGPGGSF 300
  301 EVPLNPPLTN GETVTVIVTD PAGNNSTPVT VEAPDTTAPA PATDVQVAPD GSSVTGNAEP 360
  361 GATVGVDTDG DGQPDTTVVV GPGGSFEVPL NPPLTNGETV TVIVTDPAGN SSTPVTAEAP 420
  421 DFPDAPQVNA SNGSVLSGTA EAGVTIVITD GNGNPIGQTS ADANGNWSFT PGSQLPDGTV 480
  481 VNVVARDAAG NSSPATSITV DGVAPNAPVV EPSNGSELSG TAEPGSSVTL TDGNGNPIGQ 540
  541 TTADANGNWS FTPSTPLPDG TVVNVVARDA AGNSSPPASV TVDAVAPATP TVDPSNGTTL 600
  601 SGTAEPGSSV TLTDGNGNPI GQVTADGSGN WTFTPSTPLP NGTVVNATAT DPSGNASSPA 660
  661 SVTVDAVAPA TPVVNPSNGT TLSGTAEPGA TVTLTDGNGN PIGQVTADGS GNWSFTPTTP 720
  721 LPNGTVVNAT ATDASGNTSA GSSVTVDSVA PATPVINPSN GTTLSGTAEP GSSVTLTDGN 780
  781 GNPIGQVTAD GSGNWSFTPS TPLADGTVVN ATATDPAGNT SGQGSTTVDG VAPTTPTVNL 840
  841 SNGSSLSGTA EPGSTVILTD GNGNPIAEVT ADGSGNWTYT PSTPIANGTV VNVVAQDAAG 900
  901 NSSPGASVTV DSQAPAAPVV NPSNGTTLSG TAEPGATVTL TDGNGNPIGQ VTADGSGNWS 960
  961 FTPGTPLANG TVVNATASDP TGNTSAPAST TVDSVAPAAP VVNPSNGAEI SGTAEPGATV1020
 1021 TLTDGSGNPI GQVTADGSGN WSFTPSTPLA DGTVVNATAT DPAGNTGGQG STTVDAIAPA1080
 1081 TPTVNLSNGS SLSGTAEPGS TVILTDGNGN PIAEVTADGS GNWTYTPSTP IANGTVVNVV1140
 1141 AQDASGNSSP PATVTVDSSA PPAPVINPSN GVVISGTAEA GATVTLTDAG GNPIGQVTAD1200
 1201 GSGNWSFTPG TPLANGTVIV ATATDPTGNT GPQAATTVDA VAPPAPVIDP SNGTTISGTA1260
 1261 EAGAKVILTD GNGNPIGETT ADGSGNWSFT PGTPLANGTV VNAVAQDPAG NTGPQGSTTV1320
 1321 DAVAPNTPVV NPSNGNLLNG TAEPGSTVTL TDGNGNPIGQ TTADGSGNWS FTPGSQLPNG1380
 1381 TVVNVTASDA AGNTSLPATT TVDSSLPSIP QVDPSNGSVI SGTADAGNTI IITDGNGNPI1440
 1441 GQVTADGSGN WSFTPGIPLP DGTVVNVVAR SPSNVDSAPA VITVDGVAPA APVIDPSNGT1500
 1501 EISGTAEAGA TVILTDGGGN PIGQATADGS GNWTFTPSTP LANGTVINAV AQDPAGNTSG1560
 1561 PASVTVDAIA PPAPVINPSN GVVISGTAEA GATVILTDGN GNPIGQVTAD GSGNWSFTPG1620
 1621 TPLANGSVIN ALAQDAAGNN SSPTSATVDS LAPAAPVIDP SNGSVIAGTA EAGATVILTD1680
 1681 GNGNPIGQVT ADGSGNWSFT PGTPLSNGTV VNAVAQDAAG NTSGPVSTTV DAVAPATPVI1740
 1741 DPSNGVELSG TAEPGVRVIL TDGNGNPIGQ TLADGSGNWS FTPGTPLANG TVVNAVAQDP1800
 1801 AGNTSGPAST TVDTVAPATP VINPSNGSVI TGTAEVGAKV ILTDGNGNPI GETTADGSGN1860
 1861 WTFTPGTPLA NGTVINAVAE DAAGNASGPA STTVDSVAPS APLLSISADG ALLTGTAEPN1920
 1921 SQVRIVVNGD TANPITVTVD GAGNFSLPFA PPLITGELIA GVAVDAAGNV SGPATINAPD1980
 1981 LAPPTISVPE AADTWINAAE IGDGIQVDVT VRPTMQVGQV VTVKFAGQNG YEAEVSHTLT2040
 2041 AGDIAAGNLT LTLTPPGGMG PFPEGASTVT ADINGGTAST PVPFTIDTIP PATPVLSLVG2100
 2101 NILTISAEPG TELTVTVDVG GVTATATVTA DNSGLASLNL LTDLDIDFSW DQLLNAQVSV2160
 2161 VGRDPAGNPS NTASIGVGTS IEQPVTIGNF GLDVSLNPLN PRFGFSGTTE PDSSVVIRVI2220
 2221 TPALNVELLP IQADSSGNFS LNLLSPTILT QLGLNITDIL NLGSQISFNL VSTDSNGNDS2280
 2281 AAYGITLTPN GLSLNIGQID VNGTSGDDVL SGANGSSEHI NGGDGSDLIF NVGTGDHVVA2340
 2341 GNGNDTIQIT ATDFVSIDGG AGFDTLVLAN GIDLDYNAVG VGTLSNLERI DLGKGDSGSV2400
 2401 LTLTAAEVDA ITDANNTLQI TGENNDTLNV VGAVNTGTTQ LINGITYDVY TFGSTTLLIE2460
 2461 DNTVQVVV

YRC Informatics Platform - Version 3.0
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