YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116049420, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNWTWFHKL GSPKWFYEIS GRWLPWFAVA AALLIVTGCV WGLAFAPPDY QQGNSFRIIY  60
   61 IHVPAAFLAQ SCYVMLAVAG AVGLIWKMKI ADVAVQCAAP IGAWMTFVAL LTGAVWGKPT 120
  121 WGAWWVWDAR LTAMLILLFL YFGIIALGQA ISNRDSAAKA CAVLAIVGVV NIPIIKYSVE 180
  181 WWNTLHQPAT FTITEKPAMP VEMWLPLLIM VLGFYCFFAA MLLVRMRLEV LKRESRTAWA 240
  241 KAEVKALVEK AR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	45	0.92
Non-Cytoplasmic	46	64	0.86
Transmembrane Helix	65	86	0.92
Cytoplasmic	87	92	0.91
Transmembrane Helix	93	116	0.87
Non-Cytoplasmic	117	128	0.81
Transmembrane Helix	129	148	0.92
Cytoplasmic	149	156	0.76
Transmembrane Helix	157	179	0.85
Non-Cytoplasmic	180	203	0.95
Transmembrane Helix	204	226	0.90
Cytoplasmic	227	252	0.98