YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11351518
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEAKKPQ ESLQDRLAQV VELLHRHKVV EDLTHRQEGQ HHDRVENLVH RQNLVELQRK  60
   61 LEELHPADIA HILESLPLDD RLTVWQLVKS EDDGDILLEV SDAVRETLIA DMDDHEIIAA 120
  121 TKDLDADELA DLAPELPRDV VHELMESLDA QQRERVRSAL SYEEDQVGAL MDFEMVTIRE 180
  181 DVSLEVVLRY LRRLKELPGH TDKLFVVDYD GVLKGVLPIK RLLVNDPDKQ VLEVMATDPV 240
  241 TFHPDEDGYD AAQAFERYDL ISAPVVDKGG KLIGRLTIDE MVDLIREESE SEVLNMAGLR 300
  301 EEEDIFASVW KSVRNRWAWL ATNLITAFVA SRVIGLFEGS IEKLVALAAL MPIVAGIGGN 360
  361 SGNQTITMIV RAIALDQVQP TSNSRNRLLR KELGVALVNG LAWGGVIGVV AFYLYGNWEL 420
  421 GVVMTAAMTL NLLLAAMMGV LIPMTLHRFG RDPAMGSSVM ITAMTDSGGF FIFLGLATIF 480
  481 LM

Type	Start	End	Confidence
Cytoplasmic	1	316	0.93
Transmembrane Helix	317	336	0.91
Non-Cytoplasmic	337	343	0.79
Transmembrane Helix	344	363	0.84
Cytoplasmic	364	392	0.87
Transmembrane Helix	393	415	0.93
Non-Cytoplasmic	416	422	0.83
Transmembrane Helix	423	446	0.88
Cytoplasmic	447	457	0.84
Transmembrane Helix	458	480	0.90
Non-Cytoplasmic	481	482	0.82