YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218769239, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVDHLAQ YAAYHRDRRN IFSHFIGIPM IVLSIAVLLA RPALGFGLSP ALLLALAAAL  60
   61 FYLRLDLRFG VAMTALLALT VWGAAQLAAG TTAAWLGWGV GLFVVGWIIQ FVGHYYEGRK 120
  121 PAFVDDLSGL IVGPLFVLAE LAFLLGLRGD VQREVEERAG PTCIREHKRA A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	45	0.71
Transmembrane Helix	46	63	0.91
Cytoplasmic	64	69	0.68
Transmembrane Helix	70	89	0.80
Non-Cytoplasmic	90	93	0.53
Transmembrane Helix	94	116	0.76
Cytoplasmic	117	126	0.52
Transmembrane Helix	127	147	0.83
Non-Cytoplasmic	148	171	0.57