YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218888987, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	32	0.87
Non-Cytoplasmic	33	47	0.76
Transmembrane Helix	48	68	0.94
Cytoplasmic	69	78	0.86
Transmembrane Helix	79	100	0.93
Non-Cytoplasmic	101	107	0.74
Transmembrane Helix	108	129	0.90
Cytoplasmic	130	138	0.87
Transmembrane Helix	139	159	0.93
Non-Cytoplasmic	160	166	0.75
Transmembrane Helix	167	188	0.89
Cytoplasmic	189	197	0.96
Transmembrane Helix	198	219	0.93
Non-Cytoplasmic	220	229	0.67
Transmembrane Helix	230	248	0.96
Cytoplasmic	249	267	0.83
Transmembrane Helix	268	289	0.86
Non-Cytoplasmic	290	303	0.88
Transmembrane Helix	304	323	0.94
Cytoplasmic	324	333	0.78
Transmembrane Helix	334	353	0.95
Non-Cytoplasmic	354	361	0.66
Transmembrane Helix	362	383	0.87
Cytoplasmic	384	400	0.86
Transmembrane Helix	401	422	0.93
Non-Cytoplasmic	423	464	0.79
Transmembrane Helix	465	484	0.94
Cytoplasmic	485	501	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLAQNPPA VRTVLAGLML SIFLSALDQT IVAVSLPAIS ADYADLDLLA WVISAYMVAM  60
   61 TVSMPIYGKL GDLYGRRRLM LFAIVVFTAA SLLCGLAQSM GQLVLARVLQ GIGAGGLMAV 120
  121 SQAIIGDIVP PRERGRYQGY FSSMYAIASV AGPVLGGLLT EYLSWHWVFW INLPIGLLAL 180
  181 AISRRTLVGL PVPRRQPVID YLGIVLMVVG LTALLLAITQ IGQGAAWSDP ALLGLFALAA 240
  241 LALLLFVAQE RRFREPLVPM QLFAVRAATL SWLVAFFASF QAISLTVLVP LRYQSVTGAG 300
  301 ADSAALHLLP LVMGLPLGAY CCGRLTASLG RYKPLILLGA VLLPCGIAGL ALVPVGDHWL 360
  361 SGLCMLLTGI AIGTQFPTSL VAAQNAVEQR HIGVATSNAT LFRSLGGAVG VALMSAILLA 420
  421 LLKHLRIGGG LDQGFSESAL LSSLDAASGP ARVILQHVLA DAFKVLFLVN AAVALLGLAV 480
  481 ASALPDMTLR GRGATQPTAG E