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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28926935, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLGAGPAG DDHQQASATG VNKQEQKNTV AVSQPGSIQE PPELDDFGLP IRKYHAPTIA  60
   61 TTTTTTTTTT TTTTTPQPHA IPKATASVKD ATSTDDDAQD AGKTTATERN MTLSSNHDDQ 120
  121 KSDKPGPGRE NRNSDAQAPQ LSSGARHEHC KQQGESSTAL PASRNPSIST PKALEMPSEP 180
  181 PSKKAKSPGT QEHTVTSETK PVAVKEPPKY QDMAIAEVKK DQELSPGHKR ENSTAAMGGA 240
  241 GALGVAGTSG FSHQQLTLSQ PSEEKKKDED DEWQEMPAYA PYDIYDDDNK LIAREHDESE 300
  301 EEKVQYAGLG GAGKGYTRVL LDDDAESQTS MDENTQYLFK DPGGGTGVAE EDDVQRDAVS 360
  361 QLQATKELLT EGQRIAYVGL TRLELSVMVR EVDNLQQGRS KPQKEVTFAA ESMKMWSQKM 420
  421 MMRLYSHMDI SPAEQIMIEQ LAAHGVMPQD LTPVLMANAR VRNPMADEAN KRDSTSSASK 480
  481 SSRPNSTPPS PDSESPAEPP PPYSIDDKSE LDEAVRMPSQ MPTSQKIDID LRWTVLCDLF 540
  541 LVLVADSIYD ARSRTLLERV AKDLEIPWVD ICRFEKKVTD ALEMQQAVEK ENWNEEEHKE 600
  601 NRRKMALKKR YIMMGLATVG GGLVIGLSAG LLAPVIGAGL AAGFTTIGVG GTTGFLAGAG 660
  661 GAAIITSSAA ASGSIIGVRA ANRRTGAVKT FEYRPLHNNK RVNLIVTVSG WMTGKVDDVR 720
  721 LPFSTVDPLM GDIYSVLWEP EMLTSMGDTI NILATEALTQ GLQQLLGSTI LMSLMSAIQL 780
  781 PVVLTKLSYL IDNPWAVSLD RATAAGLILA DSLIDRNLGT RPVTLVGYSL GSRVIYSCLQ 840
  841 ELARKGAFGL VQNVYLFGSP IVVKTDEYLR ACAVVSGRFV NGYNRNDWIL GYLFRLTNGG 900
  901 IRRIGGLAPI EGIAGIENFD VTEFVVGHMD YRTAMPRLLR ECGWMVENDE FDEIEEPDPE 960
  961 NHQERQRELI NEIEEARKEL EREGRERSGS KSGGAFSFFK KKKPKRQEWE VYEDSAKAGG1020
 1021 GASGSGGKTE DKDGNNHGVL FDVDAIRAEL AKEAKEQQKK RVVSQNGSGG INEDVLQVKE1080
 1081 IKSTLPPMQL KVPPPLGPPA PVIKGSRDHL RETRSASLGA VPPYRGFSSV EYNHRHQSTV1140
 1141 SLSNDRKEEN VWNSPPLPQS TTSSSHRYDY SASHAKSGFG ADDYGYSGGG RQHDDDGEIQ1200
 1201 MTFDTAFEAS PPPPPPPLSK PSTSSYGKLS SSGYGTSSTS ASTPARPDIK SVQTVPVLPA1260
 1261 ANNPWADFDD DDDFGKEKEI SMTFA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle