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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32422927, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGKVKAGA LWSKNKDELT KQLGELKTEL GQLRIQKIVS SGTKLNKIHD LRKSIARVLT  60
   61 IINAKQRAQL RLFYKNKKYL PLDLRAKQTR AIRRRLSKED ASRVLEKTKK RTTHFPLRKF 120
  121 AVKVPPAVTY LSDVHVFCGS ALPISVLFVD TPLSPHSWTL SIVVMSPVYS YNAAPTMAKC 180
  181 APTAVLQNID DIECITPILP PYMLCGGSSN CPLVAGALGI GLWLDLHQSV SDSEALQQPA 240
  241 PSRGRTNYQT TAIMSADSLE RLASAGKGDS TRTLLRVIIL LLVAGAAISS RLFSVILDPW 300
  301 FNFRATKYLV ANGFYKFWDW FDDRTWHPLG RVTGGTLYPG LMVTSGVIYH ALRALSIPVD 360
  361 IRNVCVLLAP AFSGLTAYAA YLLTNEMTPS SSAGLLAAIF MGIAPGYISR SVAGSYDNEA 420
  421 IAIFLLVFTF YLWIKALKLG SMLWGALCAL FYGYMVASWG GYAFITCLLP LHAFVLICMG 480
  481 RYSTRLYVAY TTWYALGTLA SMQIPFVGFL PVKTSEHMPA LGIFGFLQLL AFLDYVRSAI 540
  541 PSRQFQTFLW VFAGSIFGIG LIGLVVATSA GFIAPWSGRF YSLWDTGYAK IHIPIIASVS 600
  601 EHQPTAWPAF FFDLNMLVWL LPAGVYLCYQ KLADEHVFVI VYALFGSYFA GVMVRLMLTL 660
  661 TPVVCVAAAI ALSTILHTYL KAKSPTPEEL LPEESTDGTS KKASKSGLRA SNKPYIGIYA 720
  721 TFSKVTIVGL MTAYLLLFVA HCTWVTSNAY SSPSVVLASR MPDGSQHIID DYREAYQWLR 780
  781 QNTKYDAKIM SWWDYGYQIG GMADRPTLVD NNTWNNTHIA TVGKAMASRE EVSYPIMRQH 840
  841 EVDYVLIVFG GLLGYSGDDI NKFLWMVRIA EGIWPDEVKE REFFTPRGEY RVDAGATDTM 900
  901 KNSLMYKMSY YNYNNLFPPG QAQDRVRGVR LPDEGPVLNT IEEAFTSENW IIRIYKVKDL 960
  961 DNLGRDHASA SAFERGQKKK KVIKKKGPRV LRVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle