YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85091941
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRGNESPM EWEFDNNPPV DHTSPFASLL SKQPPLSSFS SQPSKTSNPT FGATSAAPQS  60
   61 SIVNEHRDTL KPPNTSFNPQ LHNKPTAPQF RNPAFTTPQK RTDEQTLESP SEASPAMTDI 120
  121 SEMPPDTPET MFDDSFRIPA TAYTPLQAGK AMFSRQYLQN GRPRQVRKRK RQRGDRDVGS 180
  181 VRSRLDHASD ESDSDWEEGI RPGRRRSSTD KNASSGWLTS FLDTVSKYPA APAVLSRWLQ 240
  241 FVINTFLIGV ILFAVFSCVM AVRNDLSRAA DRARSNLMHE ISQCTSNYHK NLCAPKLNRA 300
  301 PALELPCNEW EACMNQDPST VMMTQISARN MAEILNEFFT IISYKTWGFI LSAFLVAIIG 360
  361 TNIGFGSLRD SGVFKPSSPR KRAEPAPVAA PPPTPLHPIF STPAFHNPQQ AYIFAPIETP 420
  421 RRARQQFFDE ATDTDNSPDV RMMLPPRTPR RSPSKGERRR G

Type	Start	End	Confidence
Non-Cytoplasmic	1	240	0.68
Transmembrane Helix	241	262	0.89
Cytoplasmic	263	345	0.78
Transmembrane Helix	346	368	0.85
Non-Cytoplasmic	369	461	0.78