YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85091923
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALSKAPDV GEALSGVFGS VSLTAWICLL LPQLITNYKA KSADGLSMNF LIIWLLGDIA  60
   61 NLLGALWTSL APTAVALALY FCFADLVLIG QCSYYNAVNA RRRSRIERHA RSARHSSAET 120
  121 QETDTTAVED PSEHDPLLDH EHPRRSRSDS TGLPGSHRRH SMRHRESTLD PLTRIVTGED 180
  181 ETPDSNPWLH NTLSLVAVWV VGAAGWFISY KMGAWDVEDG LPDGGDNTIS QEPQAVIGMI 240
  241 LGYFSAVCYL CARIPQIIKN YREKSCEGLA LLFFLLSLTG NLTYGASVIA YSQERDYIVR 300
  301 ALPWLLGSLG TMLEDLIIFA QFRLYSPQRE PKTHHTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.90
Transmembrane Helix	13	35	0.84
Cytoplasmic	36	45	0.86
Transmembrane Helix	46	68	0.86
Non-Cytoplasmic	69	75	0.73
Transmembrane Helix	76	98	0.92
Cytoplasmic	99	191	0.98
Transmembrane Helix	192	210	0.91
Non-Cytoplasmic	211	234	0.86
Transmembrane Helix	235	254	0.92
Cytoplasmic	255	268	0.87
Transmembrane Helix	269	290	0.92
Non-Cytoplasmic	291	300	0.82
Transmembrane Helix	301	322	0.86
Cytoplasmic	323	337	0.88