YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85091917
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATEKVSRG KDAEPRENVY LFVPNLIGYS RIILAVASLY YMPLHPRTCS LLYSISCLLD  60
   61 ALDGYAARYL DQSTRFGAVL DMVTDRCTTA CLLVFLASAF PRWSIVFQGL IALDMASHYM 120
  121 HMYATLAMGG SDESHKNVDK SRSFILNLYY TNRTVLFLCC ALNEVFFIAL YLLSFSSPLL 180
  181 SPGLLEQVPQ IKQANPYSAA ALELARANKM DSTVPWIIAI VSFPVMMLKQ IINVVQLVKA 240
  241 SRWLAEGDLE ARRERKKTR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	42	0.77
Non-Cytoplasmic	43	86	0.48
Transmembrane Helix	87	121	0.56
Cytoplasmic	122	153	0.65
Transmembrane Helix	154	175	0.89
Non-Cytoplasmic	176	213	0.79
Transmembrane Helix	214	233	0.72
Cytoplasmic	234	259	0.70