YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7429848
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVETAVILAG GEGNRLKPLT EEVPKALLKV AGRELLYRTI KQLQDVGVKN FVIVVNKKFE  60
   61 GKVKAFLKEH NFEAEVIPNE HPEKENGYSL YLAKGRIKGE FAVVMSDHIY EKAFLEKAVE 120
  121 GKGLIVDRLG LYINKNEATK VKCEEGRIKY IGKNLEKYDG FDTGFFVLDE SIFEVAEEAL 180
  181 KEQKKLTMSE LAKRAQIPCT EVSGYFWMDV DTPEDVEKAK KYLVKTAIKG VGDGFISRNL 240
  241 NRKVSTRISP YLVDKFTPNQ LTVLTFLLGM FSALVAYFSP ALGGILLQIN SMLDGLDGEV 300
  301 ARAQMRTTKF GAWLDSVLDR YVDFAFLSAL AMHLKPSWDF MPWVFAALFG SVMVSYSTER 360
  361 YKGAYCEDAY AVIKELRYLL GKRDERIFMI MIFTILGWIK ALFVVLAIIT NLRVILTIYL 420
  421 VWKKKGNV

Type	Start	End	Confidence
Cytoplasmic	1	262	0.69
Transmembrane Helix	263	286	0.85
Non-Cytoplasmic	287	339	0.65
Transmembrane Helix	340	357	0.81
Cytoplasmic	358	386	0.79
Transmembrane Helix	387	410	0.85
Non-Cytoplasmic	411	428	0.72