YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85116155
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLYYSLVFM LLVAEMSIFM LLIVPLPFTI RRRLFTFISE NPIIAKLQYG LKITFIFILI  60
   61 LFIDSVNRVY RVQVELAAAT DASKGNAAAI MGHERLEVQA RKFYSQRNMY LCGFTLFLSL 120
  121 ILNRTYIMIL EVLRLEEKLK KFEGTDKDTK QSEKLAMAGD PGEISRLKRE IQLRDQDIET 180
  181 LKKQSASLHR EYDELAEKYG RTQQDDVPKK MK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.76
Transmembrane Helix	7	29	0.92
Cytoplasmic	30	48	0.72
Transmembrane Helix	49	66	0.75
Non-Cytoplasmic	67	108	0.66
Transmembrane Helix	109	130	0.67
Cytoplasmic	131	212	0.54