YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32422693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.86
Transmembrane Helix	64	83	0.87
Non-Cytoplasmic	84	172	0.69
Transmembrane Helix	173	197	0.80
Cytoplasmic	198	260	0.47
Transmembrane Helix	261	283	0.72
Non-Cytoplasmic	284	323	0.74
Transmembrane Helix	324	346	0.66
Cytoplasmic	347	363	0.93
Transmembrane Helix	364	384	0.90
Non-Cytoplasmic	385	396	0.89
Transmembrane Helix	397	418	0.87
Cytoplasmic	419	478	0.94
Transmembrane Helix	479	500	0.86
Non-Cytoplasmic	501	507	0.85
Transmembrane Helix	508	528	0.96
Cytoplasmic	529	538	0.91
Transmembrane Helix	539	563	0.86
Non-Cytoplasmic	564	579	0.88
Transmembrane Helix	580	602	0.91
Cytoplasmic	603	617	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGIIGFIR SIYQLDTLDT RFTTPSSVPY KLAAEAKNDP HGAQEGGLSK GKKAERSKWS  60
   61 TPEFYLYYLV FLVAIPYMFW VPFEVSRESD PRYPKFQRYL SDGWMLGRKV DVSDIQLRTI 120
  121 RGKIPHIFGL LVVQPLLRRV WKLFKPTRLE PGASETSPRA AEARLEQRIS FDAFFGAILL 180
  181 TALHGTSGLK ILGLLWLNYQ IATRLPRKVV PWATWIFNLY ILVTMKVYDG YRFKTFVNLI 240
  241 PFAPDSLLEL ASWMDSQQGL LNRWHILFNI TILRLISFNL DYAWMMDRQG GSPIEKKQLD 300
  301 PASLSERDRV GTPAPKSNYS FRNYFAYAIY APLYLAGPIL TFNDYISQCR YQSASIELSR 360
  361 TVKYGIRCLL VLLAMEFVLH FNYVNAISNA RPDWSSYTPA QIALLSFFKL HIIWLKLLVP 420
  421 WRLFRFWALV DGIDPPENML RCVSDNYSTL SFWRSWHRSF YRWTLRYIYI PLGGSNFRTL 480
  481 VSSAYSIITY LAVFMFVAIW HDVDFQLLVW SWLIVAFFLP EIAAGYLFPR KKWEGRPTAY 540
  541 RMLCCVGAVG NVLMMISANV VGFGGGVDAM KALWEGLFRG LSGISFLTGS CIALFVGIQV 600
  601 MFEIRQSELR KGINLKC