YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28926864, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSHTQSSS NGPDSRMRRN TATSSVPSSG ITSSSSAALP PQRRTVKREK SGNPKNMNGP  60
   61 LYMQRNENIV LVRRVKRKGE GPLKQLTRWF VENQIGFAFN LLALLFLAHG CMPRARSHTG 120
  121 KYFTLSYYNP TTGQYGLGKD DGFLIFFCII LFTGLRAATL EYLFAPYAKS KGISKRKDIT 180
  181 RFSEQAWLLI YYSVFWTLGL YIYWQSPHFF NLRELWTNWP NRELTGIMKG YMLAQLAFWL 240
  241 QQILVINIEE RRKDHWQMFT HHIITICLIY ASYRYGHTRV GNLILVLMDV VDLFLPLAKC 300
  301 LKYLGHSSAC DFMFVVFMVS WFVARHVLYL TVCYSVYAHT TSIIPYGCFS GTPGNLKGPF 360
  361 QPPADKGALY LLEPLWNPDG LVCYDDTVKW TFLSMLLFLQ ALTIMWFSLI IRVALRVLRG 420
  421 EGADDTRSDD EGCEDVDAED DEDETEFVYE EAQALAEEVG VDELDLKNWA ERRRAGHGVG 480
  481 GVTATGVSLP GHSDRKELLG RIGCEKQVE

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	112	0.87
Non-Cytoplasmic	113	142	0.93
Transmembrane Helix	143	165	0.95
Cytoplasmic	166	185	0.93
Transmembrane Helix	186	205	0.94
Non-Cytoplasmic	206	225	0.93
Transmembrane Helix	226	246	0.90
Cytoplasmic	247	257	0.83
Transmembrane Helix	258	276	0.82
Non-Cytoplasmic	277	282	0.67
Transmembrane Helix	283	301	0.48
Cytoplasmic	302	303	0.39
Transmembrane Helix	304	338	0.66
Non-Cytoplasmic	339	389	0.85
Transmembrane Helix	390	410	0.90
Cytoplasmic	411	509	0.94