YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7518580
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAIKIAEE FYNDEYSDSV LYAELAKYEK NKEIKEEFLR LSRMEAKHAK FWHDFLVRRG  60
   61 VKPKKPRIKK LTFFTVKLLR KLFGPAMVVS MLEMGENSAI QKYFKFFGEF SDEITEEEFE 120
  121 GLRGIIIDEL EHEKFFSESK KLFHVENIRD FVLGMNDGLV EILGAVTGLS AVYPNSPRLV 180
  181 GISGLIVGVA GALSMGIGAL ISVRSQRQVS EAIRERTKIL FKVSPEKAKE ELYEKLVEGG 240
  241 LPEEIAREVS EKLLEKEEAI IKLLVPEEEE NEFRAALYTG IAYLFGVAFP VTPYFFASTS 300
  301 LRALPISVTL AGLALAIVAT SISLISGISI RKKVIEMVTT GLGAAFLSYI FGHIMESLFN 360
  361 VSAL

Type	Start	End	Confidence
Cytoplasmic	1	150	0.77
Transmembrane Helix	151	172	0.67
Non-Cytoplasmic	173	179	0.83
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	275	0.98
Transmembrane Helix	276	297	0.90
Non-Cytoplasmic	298	303	0.82
Transmembrane Helix	304	327	0.88
Cytoplasmic	328	336	0.75
Transmembrane Helix	337	355	0.92
Non-Cytoplasmic	356	364	0.85