YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3256530, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSTSEISV IAYSKDKFMS TKVSSLEEAL SFRDYTVVWI NVIYSPALDA ELKKLGVSNR  60
   61 VIKAIKRDSS ARVFIFPDYI FVILHQVYEV AGSLKREKTS ILLMNNVILT IQERPRDVFN 120
  121 IIRESIREGE GSLRRKGPGY LFVEILDAII ENYVPILEKI SAEIEKIESK ILANPDQGIL 180
  181 RKIHKMRRDV LFMRRTILPL LTCFRRIKVE GKEFLDAETE NLLEDLYAHV RDILEVIETQ 240
  241 KELTDSLVDI YYSTISMKIN EIIRILTVVS TIFIPLTFIT GIYGMNFRYM PELQWRYGYP 300
  301 AVLVVMFALA IGMLLYFKKK KWL

Type	Start	End	Confidence
Cytoplasmic	1	262	0.98
Transmembrane Helix	263	285	0.90
Non-Cytoplasmic	286	296	0.87
Transmembrane Helix	297	317	0.95
Cytoplasmic	318	323	0.94