YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14590004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSIIVPTY NERDNLEELF SRISSALKGY DYEIIIVDDD SPDKTWEKAM ELSKLYPVKV  60
   61 IRRVNEKGLS SAVIRGFSEA SGDVFVVMDA DLQHPPEVIP SLLREIEKGN DIAIASRYVK 120
  121 GGKVENWPFY RRLISRGAII IGRLALPKIA GIKDPVSGFF ALKRSVVEGV KLNPIGFKIL 180
  181 MEILIKGKYS RVTEVPFTFS TRKFGESKLK GKTMVNYLRH VYRLMKWEGE VDRILKFSIV 240
  241 GLSGVGVNEG FLWLFVNFFH ISKELGVIPS TELSILNNFL WNDLWTFKDI KKGSVIERLA 300
  301 KFHVAAFVGA VAQFLVYWIL LFLGIHYLLA NLFGIGASFV VRYIFNRHIT WAQ

Type	Start	End	Confidence
Cytoplasmic	1	233	0.86
Transmembrane Helix	234	256	0.72
Non-Cytoplasmic	257	264	0.54
Transmembrane Helix	265	281	0.62
Cytoplasmic	282	298	0.83
Transmembrane Helix	299	321	0.85
Non-Cytoplasmic	322	326	0.65
Transmembrane Helix	327	345	0.95
Cytoplasmic	346	353	0.90