YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28926715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.94
Transmembrane Helix	60	83	0.82
Non-Cytoplasmic	84	90	0.69
Transmembrane Helix	91	110	0.76
Cytoplasmic	111	126	0.83
Transmembrane Helix	127	145	0.93
Non-Cytoplasmic	146	164	0.86
Transmembrane Helix	165	188	0.86
Cytoplasmic	189	198	0.75
Transmembrane Helix	199	221	0.84
Non-Cytoplasmic	222	242	0.87
Transmembrane Helix	243	263	0.91
Cytoplasmic	264	356	0.74
Transmembrane Helix	357	379	0.87
Non-Cytoplasmic	380	391	0.74
Transmembrane Helix	392	413	0.87
Cytoplasmic	414	421	0.79
Transmembrane Helix	422	444	0.87
Non-Cytoplasmic	445	494	0.94
Transmembrane Helix	495	514	0.94
Cytoplasmic	515	541	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNIELMRR NKSYDTSSEA ITANIIGRES FSLDDPVPDK TDAVNNHGFF ELPKQDQRNF  60
   61 GLLVLLYFLQ GVPLGLATGS VPFLLKSKLS YAEIGVFSLA SYPYSLKLLW SPIVDAIWSP 120
  121 KVGRRKSWIL PIQLLSGIGM LYLGSRVEGL MDTMGKEGGP TVWGFTWWWF FLVLMCATQD 180
  181 IAVDGWALTL LTPGNVSYAS TAQTVGLTAG QFLSYTVFLA FHSKEFANRW FRTEPLDHGL 240
  241 MSLGGYLTFW GWAYIAVTIG LGLMKREERT KNEDGVWDVY KIMWGVLNLK NVQTIIIIHL 300
  301 IAKIGFQAND AVTNLKLLDK GFGTENMALT VLIDFPFEIG LGYYAGKWSQ EFTPMRLWCW 360
  361 GFMGRLVAAI LAQFTVVMFP AEGVTSWYML VVIAEHIFST FTNTIMFVAV SAFHARISDP 420
  421 VIGGTYMTLL ATVCNLGGTF PRFFVLRLVD YFTTATCVPS SKTATFSQPF SCAIQEDKTR 480
  481 CLANGGTCNM IQDGYYIVNL LCVAIGVVTF TMFIRPKVIH LQDLPLKAWR LASSGVAARK 540
  541 R