YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7518076, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKMIRLAME FYKNELSDSV LYAELAKYEK DEKVREEFLR LSRIEAQHAK FWERFLEKRG  60
   61 VKPEKPSVGK IKRFSVRLLR RLLGPGLTVS FLEMGENNAI NSYFNFLVSN AKAFDEEEVK 120
  121 ALKMIIFEEL EHEKFFSEAK KRFHVENLRD FVLGMNDGLV EILGAVTGLS AVYPNLPRLV 180
  181 GISGLIVGVA GALSMAIGAL ISVRSQRQVS ESIRNRTKII FQVSPERAVQ EIYERLREGG 240
  241 LPEDIAREVS EKLSQRGEAV IKLLVPEEDE NEFRAALYTG VAYLFGVMFP ITPYFLASSS 300
  301 LTALPLSVTL AGLALAIVAT SISLISGISI RKKVAEMVVT GLGAAFLSYL FGHLMESIFH 360
  361 VSAL

Type	Start	End	Confidence
Cytoplasmic	1	150	0.86
Transmembrane Helix	151	172	0.74
Non-Cytoplasmic	173	179	0.81
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	275	0.98
Transmembrane Helix	276	297	0.89
Non-Cytoplasmic	298	305	0.70
Transmembrane Helix	306	328	0.88
Cytoplasmic	329	336	0.79
Transmembrane Helix	337	355	0.92
Non-Cytoplasmic	356	364	0.79