YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5458457, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVILAAGY GTRMGEKAKG LIKIAGREIV YRTIKNLMKQ GIGEFVIVTN ERYKDAYEEF  60
   61 LKRYNIKGTV VVNPNPERGN GFSLHIAKDY VSGKFVLVMS DHVYEERFYE VAVKGEGLIA 120
  121 DRRPRYVDVD EATKVKVEKD RIIEIGKGLK EWDALDTGFF ILDDSIFDVT SKLAQEKEVV 180
  181 ELKDVVKEVK LKVTFVDGLF WMDVDTPEDI KKARKLIVYT SVKGVGDGFI SRHLNRKIST 240
  241 RISALLVEHV TPNQMTIVTF LFGIFSALMN FISVPIAGIL YQVSSILDGV DGEIARARMQ 300
  301 TSKFGGYFDS ILDRYVDFTF LLILAYVSIR EPLWWAIAAI AMFSSAMVSY STERFKGAYC 360
  361 VDAYKVIPAL RKVPGKRDER IFLTMLLTLV GWIKALFLIL AIWSTFRVIV TVYLVKTRYA 420
  421 QDEG

Type	Start	End	Confidence
Cytoplasmic	1	256	0.83
Transmembrane Helix	257	280	0.85
Non-Cytoplasmic	281	331	0.75
Transmembrane Helix	332	350	0.81
Cytoplasmic	351	380	0.89
Transmembrane Helix	381	403	0.90
Non-Cytoplasmic	404	424	0.86