YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32421769, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVKYLAPAI VAIGAASAQS ASTCTVSGGT TTIHSQADAT GLAKCKTIKG SVVVTKEVAG  60
   61 DFQLSGPQII TGDLKIENNP NINSVGSDTL EQIGGEFRLV ETTQLNAVNM LKLNSVSKLT 120
  121 WQSIGNVPDM GMTQLNKVDE ITISDSHLRN IDAINVTSIK SMNLDNNQFI TKYEPAIKEI 180
  181 TGDLTIQANG LDMEVGFPNL IWAMNMAISD VSKISFPSLQ VVNGSARFDN NKFDSFSFPN 240
  241 LTETKTGDIS FVGNENMQNL TFPKLTQVGG GLLVANNTEL EEINGFPALQ TVVGAIKLRG 300
  301 NFTEVKFPKL QSVRGAFDLS STNDVTNDCK ALAKMAPKTQ GGNGEIEGTF DCQSNNEEAN 360
  361 QDTSGKTGSG QGVTGGSSGS GSDKKDSGAA GLSVNAGLFL AAAGVLAQLL L

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	411	0.97