YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28921256, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQSVAHDK QKILFSTDAG HFSLIRAMHL ADLITELNGL CGILSLFSSL RYCLGDPADK  60
   61 TNIYYALAFL PFGLFFDFMD GKVARWRKKS SMMGQELDSL ADLISFGVAP AVVAFAIGIR 120
  121 TPLDHLCLGF FILCGLTRLA RFNVTATAIP KDANGKAAYF EGTPIPTTLG LDAIMAYWVS 180
  181 QGWIHDSLPW GTMFQGTALE FHPIVLIFML HGCLMTSKTI HIPKP

Type	Start	End	Confidence
Cytoplasmic	1	32	0.90
Transmembrane Helix	33	54	0.83
Non-Cytoplasmic	55	61	0.88
Transmembrane Helix	62	79	0.94
Cytoplasmic	80	98	0.88
Transmembrane Helix	99	119	0.92
Non-Cytoplasmic	120	125	0.74
Transmembrane Helix	126	142	0.90
Cytoplasmic	143	157	0.77
Transmembrane Helix	158	179	0.83
Non-Cytoplasmic	180	197	0.82
Transmembrane Helix	198	217	0.88
Cytoplasmic	218	225	0.76