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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28921389, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGGYDLYR SNTDSSIEKP SERSRWTPLT RMLLSGEMTQ ERQKELSPRE KFDRWMVNEG  60
   61 YRRIFVFVFM VLHAIVFAFG FVNYAVKDNL QIARDTFGPT YMIARSAALV LHVDVALVLF 120
  121 PVCRTLISLA RQTPLNGIIQ FDKNITFHIT TAWSIFFWSW VHTIAHWNNF AQIAAKNNLG 180
  181 IYGWLLANFV SGPGWTGYIM LIALTGMVIT SVEKTRRANY ERFWYTHHMF IIFFFFWSIH 240
  241 GAFCMIQPDF APFCISVGTT AIGVFWQYWM YGGFAYLAER IAREVRGKHK TYISKVVQHP 300
  301 SNVCEIQIKK ENTKTRAGQY IFFCCPAVSL WQYHPFTLTS APEEDYISIH VRVVGDFTRQ 360
  361 LAETLGCEFD NKKKGDTSKV VGVSQENDEV DPALRRVLPR VYVDGPFGSA SEDVFKYEVS 420
  421 VLVGAGIGVT PFASILKSIW YRMNYPQQKT RLSKVYFFWV CRDFGSFEWF RSLLLAIEAQ 480
  481 DVDHRIEIHT YLTAKIKIDD ATNIMINDAN ADKDTITGLR SPTNFGRPNW DMIFRGIRKL 540
  541 HAPGEAGVFF CGPKGLGSSL HIFCNKYSEP GDSKCPTFTI AKELFSVIKD EAPDAIKEGE 600
  601 IKNQFGRKVA IDASMSIYSF LIAVRSDGQQ LMNEAGETTS HLMGMFYRTL RMVDNGIKPL 660
  661 YVFDGAPPKL KSGELAKRFQ RKQEATEGLE EAKETGTAED VEKFSRRTVR VTREHNAECQ 720
  721 KLLKLMGIPY IVAPTEAEAQ CAVLARAGKV YAAASEDMDT LCFNAPILLR HLTFSEQRKE 780
  781 PIQEIHLEKV LEGLGMERKQ FIDLCILLGC DYLDPIPKVG PSTALKLIRE HGTLEKVVEW 840
  841 MKADPKGRYQ IPEDWPFEDA RTLFFEPDVR PADDPLCDFK WDKPDIEGLI QFLVHEKGFS 900
  901 EDRVRSAGTK LEKNMKTSQQ ARIEGFFKIL PKTEEEKKAH KRKLEEQAEQ KRKKVKEEKK 960
  961 EKAKLKAKPR GA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle