YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14027156, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.95
Transmembrane Helix	46	68	0.85
Non-Cytoplasmic	69	74	0.85
Transmembrane Helix	75	95	0.91
Cytoplasmic	96	108	0.83
Transmembrane Helix	109	128	0.94
Non-Cytoplasmic	129	135	0.75
Transmembrane Helix	136	155	0.90
Cytoplasmic	156	162	0.73
Transmembrane Helix	163	182	0.91
Non-Cytoplasmic	183	194	0.92
Transmembrane Helix	195	215	0.93
Cytoplasmic	216	225	0.78
Transmembrane Helix	226	247	0.92
Non-Cytoplasmic	248	252	0.85
Transmembrane Helix	253	273	0.93
Cytoplasmic	274	282	0.81
Transmembrane Helix	283	303	0.93
Non-Cytoplasmic	304	308	0.83
Transmembrane Helix	309	328	0.92
Cytoplasmic	329	347	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLWHQAYR DAGDAGAHLG RDQGRIADVT SGAEPGTTGG HGTLRGIALK IVSVAVFVGM  60
   61 QTCIKAAGDV PAGQIVFFRS FFAIFPIIAF LALKGQLPTA FVTKRPFNHV ARGVVGVGAM 120
  121 GLGFFALTRL PLPEAITLNY AQPLLVVVFS SVFLGESIRV YRWSAVAVGL IGVLIISWPE 180
  181 LTLLNSDEGL DDQEVLGVMA ALVAAAISAV AMLLVRNLVQ TEKTATIVLW FSSTASVLSL 240
  241 LTLPFGWQSL TPVQAALLVM AGFCGGLGQI LMTSAYRHAE ASVVAPFEYT SMILGVVVGY 300
  301 FIFGDVTSLN TLIGGAIVVA AGVFIIWRER QLGLERTRTR KVTLPQG